PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON47409.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93320.9 Da    PI: 5.8919
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON47409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-192078357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PON47409.1 20 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                5679*****************************************************97 PP
2START173.21.7e-541643812205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGG........CT-TT-SEEEEEEEECTT..EE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddke........qWdetlakaetlevissg..ga 90 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++  + ld++          W ++++++++++v+s+g  g+
  PON47409.1 164 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVSPSQLDRMVaeilkdrpSWFRDCRAVDVINVLSTGsgGT 262
                 7899*************************************************998887755555555555555555********************** PP

                 EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
       START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                 ++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vR+e+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  PON47409.1 263 IELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmpvVQNFVRVEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLY 361
                 ************************************************999999********************************************* PP

                 HHHHHHHHHHHHHHTXXXXX CS
       START 186 ksglaegaktwvatlqrqce 205
                 +s++  ++kt++a+l+++++
  PON47409.1 362 ESSTLLAQKTTMAALRHLRQ 381
                 ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    
MMAVTSACKD GTKIAMDNGK YVRYTPEQVE ALERLYHDCP KPSSMRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTQNTTLA TTDTSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHGCTGVAA RACGLVGLEP TRVSPSQLDR MVAEILKDRP  240
SWFRDCRAVD VINVLSTGSG GTIELLYMQL YAPTTLAPAR DFWLLRYTSV LEDGSLVVCE  300
RSLNNTQNGP SMPVVQNFVR VEMLPSGYLI RPCEGGGSII HVVDHMDLEP WSVPEVLRPL  360
YESSTLLAQK TTMAALRHLR QISQEVSQPN ATGWGRRPAA LRALSQKLSK GFNEAVNGFT  420
DEGWSMLESD GIDDVTLLVN SSPSKMMGVN ISYANGFPSG SNSVLCAKAS MLLQNVPPAI  480
LLRFLREHRS EWADSSIDAY SAAAIKAGPC SLPGARAGNF GGQVILPLAH TIEHEEFMEV  540
IKLENMGHYR DDMIMPVDIF LLQLCSGVDE NAVGTCAELV FAPIDASFSD DAPILPSGFR  600
IIPLDSGMDS PSPNRTLDLA SALEVGPTGN RASDDNAGNS GNRKSVMTIA FQFAFEMHLQ  660
ESVAAMARQY VRSIIASVQR VALALSPSRL GSHTGLRPPP GTPEAQTLST WICQSYRCYL  720
GVELLKNEGS ESILKSLWQH SDAILCCSLK AMPVFTFANQ AGLDMLETTL VALQDITLEK  780
IFDDNGRKTL CSEFPQIMQQ GFMCLQGGIC MSSMGRPVSY ERAVAWKVLD EEENAHCICF  840
MFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein