PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON46926.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 469aa MW: 52499.6 Da PI: 9.6288

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON46926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PON46926.1 46 YVCEICNQGFQRDQNLQMHRRRH 68 9*********************9 PP
2	zf-C2H2	13.7	0.00019	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ PON46926.1 125 WVCHRCSKAYAVHSDFKAHLKTC 147 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MDNSNNNNNN NSNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI CNQGFQRDQN 60 LQMHRRRHKV PWKLLKRESP AGVVRKRVFV CPEPTCLHHD PCHALGDLVG IKKHFRRKHS 120 NHKQWVCHRC SKAYAVHSDF KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACTMGRLRS 180 ESQALQPAAC LSRTASSPSP SSTDTNLAMP INTTTSNNPS DTTTTTIPPT TALVILSTTP 240 SPQNPTLSKT RTSNSTNPPF HNLDLQLSTT ATTTMSNENQ PKKDVNHHEN DQYSTQLQLS 300 IGSSDFGEKN DLSNNNHKCS PRESMMSSTT AANGNNVDKT MRVMKEEARE QLRVAMAEKS 360 YAEEARQQAK RQIELAEQEF ANAKRIRQQA QAELDKAQAL KEHAIKQLNS TLLQLTCHAC 420 KHHFHHARST LSYIITTSSS DRQTLENGRS NNTVLPIRDR LGKSAISPS

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MDNSNNNNNN NSNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI CNQGFQRDQN  60
LQMHRRRHKV PWKLLKRESP AGVVRKRVFV CPEPTCLHHD PCHALGDLVG IKKHFRRKHS  120
NHKQWVCHRC SKAYAVHSDF KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACTMGRLRS  180
ESQALQPAAC LSRTASSPSP SSTDTNLAMP INTTTSNNPS DTTTTTIPPT TALVILSTTP  240
SPQNPTLSKT RTSNSTNPPF HNLDLQLSTT ATTTMSNENQ PKKDVNHHEN DQYSTQLQLS  300
IGSSDFGEKN DLSNNNHKCS PRESMMSSTT AANGNNVDKT MRVMKEEARE QLRVAMAEKS  360
YAEEARQQAK RQIELAEQEF ANAKRIRQQA QAELDKAQAL KEHAIKQLNS TLLQLTCHAC  420
KHHFHHARST LSYIITTSSS DRQTLENGRS NNTVLPIRDR LGKSAISPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	22	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-141	C2H2 family protein