PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON42886.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 724aa    MW: 78876.4 Da    PI: 6.6356
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON42886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-203388156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q++ Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  PON42886.1 33 KKRYHRHTAHQIQKLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 88
                678899***********************************************998 PP
2START192.91.6e-602334582206
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 +a  a++el+++ + +ep+W+ks+     + +n d + ++f+++++       ++ea+r+sgvv+m+   lv  ++d + +W e ++     a t+evi
  PON42886.1 233 IAANAMEELLRLLQTNEPLWMKSAagdgrDVLNLDSYERIFPRANShlknpnLRIEASRDSGVVIMNGLALVDMFMDPN-KWVELFPtivsMARTIEVI 330
                 67889************************9*************999*********************************.******9999999****** PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 ssg      g lqlm  elq+lsplvp R+f+f+R+++q ++g w+ivdvS d +++++  +s  R+++lpSg+li++++ng+skvtwvehv+ ++++p
  PON42886.1 331 SSGvlgshsGSLQLMHEELQVLSPLVPtREFYFLRHCQQIEQGLWAIVDVSYDFPRDNQ-FASQFRSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKSP 428
                 **********************************************************9.8************************************** PP

                 .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                  h l+r l++sgla+ga +w+atlqr ce+
  PON42886.1 429 tHRLYRDLIHSGLAFGAERWLATLQRMCER 458
                 ****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MEYASGGGGG SGGGGGGGGG GGDNDASDPQ RRKKRYHRHT AHQIQKLESM FKECPHPDEK  60
QRLQLSRELG LAPRQIKFWF QNRRTQMKAQ HERADNCALR AENDKIRCEN IAIREALKNV  120
ICPSCGGPPI NEDSYFDEQK LRMENAQLKE ELDRVSSIAA KYIGRPISQL PPVQPIHISS  180
LDLSMASFGA HGMGVGGPSL DLDLLPGSSS TIPTLPYQPP GISDMDKSLM SDIAANAMEE  240
LLRLLQTNEP LWMKSAAGDG RDVLNLDSYE RIFPRANSHL KNPNLRIEAS RDSGVVIMNG  300
LALVDMFMDP NKWVELFPTI VSMARTIEVI SSGVLGSHSG SLQLMHEELQ VLSPLVPTRE  360
FYFLRHCQQI EQGLWAIVDV SYDFPRDNQF ASQFRSHRLP SGCLIQDMPN GYSKVTWVEH  420
VEIEDKSPTH RLYRDLIHSG LAFGAERWLA TLQRMCERFA CLMVSGTSTR DLGGVIPSPD  480
GKRSMMKLAQ RMVNNFCASI STSNGHRWTT LSGVNEVGVR VTVHKSTDPG QPNGVVLSAA  540
TTIWLPISPQ DVFNFFKDER TRSQWDVLSN GNAVQEVAHI ANGSHPGNCI SVLRAFNTSQ  600
NNMLILQESC IDSSGSLVVY CPVDLPAINI AMSGEDPSYI PLLPSGFTIS PDGRLDQGGG  660
GGDGASTSAA ATGRSGGSLI TVAFQILVSS LPSAKLNLES VTTVNNLIGT TVQQIKAALN  720
CPTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein