PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON42659.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79037.4 Da    PI: 6.4719
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON42659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.9e-2064119156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PON42659.1  64 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                 789999***********************************************998 PP
2START124.91e-392524231150
                 HHHHHHHHHHHHHHHHC-TT-EEEE...........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
       START   1 elaeeaaqelvkkalaeepgWvkss...........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                 ela +a++el+++a+ ++p+Wv              e++n+de+l++f+++ +      ++ea+r+++vv+m++++lve+l+d++ qW++ +     +a
  PON42659.1 252 ELAVAAMEELIRMAQTGDPLWVPADnsngtttttstEILNEDEYLRTFPRGIGpkplgMKSEASRETAVVIMNHTNLVEILMDVN-QWSTVFCgivsRA 349
                 57899*****************998999**********************999********************************.******99999** PP

                 EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
       START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                 +t++ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p      R +++pS
  PON42659.1 350 MTVDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPGPL----SRTRRRPS 423
                 ****************************************************************95....66667776 PP
3START25.92.1e-09424458172206
                 --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                 +++r +h+++++lv+sg+a+gak+wvatl+rqce+
  PON42659.1 424 VDDRAVHNIYKPLVNSGIAFGAKRWVATLDRQCER 458
                 57899****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MYQPNLFETP HHHLVDISHK SNASESDQLG IKMRDDDLET KSGTDLIEAP LSGDEQDPSQ  60
HSKRKRYHRH TQRQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA  120
HHERHENAIL KAENEKLRAE NNRYKEALSN ATCPNCGGPA ALGEMSFDEQ HLRIENARLR  180
EEIDRISGIA AKYVGKPLSS LSHLSSSRSL DHIGVGNFGS QSGFVGEMFG AASDLLRSVS  240
VPTEADKPII VELAVAAMEE LIRMAQTGDP LWVPADNSNG TTTTTSTEIL NEDEYLRTFP  300
RGIGPKPLGM KSEASRETAV VIMNHTNLVE ILMDVNQWST VFCGIVSRAM TVDILSTGVA  360
GNYNGALQVM TAEFQVPSPL VPTRENYFVR YCKQHADGTW AVVDVSLDNL RPGPLSRTRR  420
RPSVDDRAVH NIYKPLVNSG IAFGAKRWVA TLDRQCERLA SSMANNIPAG DLCVITSPEG  480
RKSMLKLAER MVMSFCIGVG ASTAHAWTTL SATGSDDVRV MTRKSTDDPG RPPGIVLSAA  540
TSFWLPVRPK RVFDFLRDEN SRSKWDILSN GGLVQEMAHI ANGRDPGNCV SLLRVNSANS  600
SQSNMLILQE SSTDSTGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA ILPDGPASGP  660
INNGPGGILE VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIKCTV ERIRAAVTSE  720
NVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein