PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON39308.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 454aa MW: 49539.9 Da PI: 8.1961

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON39308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	51	77	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p PON39308.1 51 PGEPDCSYYIRTGLCRFGATCRFNHPP 77 5789*********************97 PP
2	zf-CCCH	31.7	2.5e-10	117	136	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++tGtCk+G++CkF+H++ PON39308.1 117 YFLKTGTCKFGATCKFHHPR 136 9*****************96 PP
3	zf-CCCH	35.8	1.4e-11	158	182	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG Ck+G++CkF+H++ PON39308.1 158 ESECAYYLRTGLCKFGNTCKFHHPQ 182 679********************97 PP
4	zf-CCCH	38.6	1.8e-12	314	340	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ PON39308.1 314 PGQPECQFYMKTGDCKFGAVCKFHHPR 340 5789*********************96 PP
5	zf-CCCH	40.1	6.1e-13	360	386	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ PON39308.1 360 PGEPLCIFYSRYGICKFGPSCKFDHPM 386 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MEFDAEIPMS SLAAVTEAAP SLSPSFSQDA LWQMNLRSSE TMESGTYPER PGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIMFSHI PSINGSYFLK 120 TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNESE CAYYLRTGLC KFGNTCKFHH 180 PQPANMMVSM RGSPVYPTVQ SPTTPGQQSY PGANWSRASF IPNPRWQGSS SYAPLILPQG 240 MVSVPSWNTY SGQLGSVPSS ESQPAAGSSQ IYGTPRQSDQ ANTGSQGTFS PYRSGSVPVG 300 FYALPRENVF PERPGQPECQ FYMKTGDCKF GAVCKFHHPR ERLIPAPDCL LSPMGLPLRP 360 GEPLCIFYSR YGICKFGPSC KFDHPMGIFT YNLSASSSPD APVRRLLGSS SGTAQLNLSS 420 EGLVEVGSTN PRRLSLSETR QMPSGDDNDS DTEG

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MEFDAEIPMS SLAAVTEAAP SLSPSFSQDA LWQMNLRSSE TMESGTYPER PGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIMFSHI PSINGSYFLK  120
TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNESE CAYYLRTGLC KFGNTCKFHH  180
PQPANMMVSM RGSPVYPTVQ SPTTPGQQSY PGANWSRASF IPNPRWQGSS SYAPLILPQG  240
MVSVPSWNTY SGQLGSVPSS ESQPAAGSSQ IYGTPRQSDQ ANTGSQGTFS PYRSGSVPVG  300
FYALPRENVF PERPGQPECQ FYMKTGDCKF GAVCKFHHPR ERLIPAPDCL LSPMGLPLRP  360
GEPLCIFYSR YGICKFGPSC KFDHPMGIFT YNLSASSSPD APVRRLLGSS SGTAQLNLSS  420
EGLVEVGSTN PRRLSLSETR QMPSGDDNDS DTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein