PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON38600.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 351aa MW: 38694.2 Da PI: 8.8917

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON38600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.1e-18	207	261	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PON38600.1 207 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 261 678899***********************************************98 PP
2	HD-ZIP_I/II	126.9	8.8e-41	207	297	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PON38600.1 207 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELHELR-ALK 297 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MELALSLGDT STPFSFLDKA QKMTLNNKAE LGFCMALGSS LSTTSRSSSS SEDRKKDHHD 60 HHRDLIRSTR KASSSSDLVQ VPLQLDLLPS APVPRSQTGS QLRFPWLTDN LVISEPAGSS 120 DNMNIGPGKG FDVNRLPAVG ATPEETEDGI TISSPNSTLS SFHMDFCVRS SSSGRNNNSV 180 KRDHNREGET ERASSRASDD EENGSTRKKL RLSKDQSAFL EESFKEHSTL NPKQKLALAK 240 QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL HELRALKTSQ 300 PFYMQLPATT LTMCPSCERV ATAGAGAGSA SKSGNTTVLP FSNNQVGKAA S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MELALSLGDT STPFSFLDKA QKMTLNNKAE LGFCMALGSS LSTTSRSSSS SEDRKKDHHD  60
HHRDLIRSTR KASSSSDLVQ VPLQLDLLPS APVPRSQTGS QLRFPWLTDN LVISEPAGSS  120
DNMNIGPGKG FDVNRLPAVG ATPEETEDGI TISSPNSTLS SFHMDFCVRS SSSGRNNNSV  180
KRDHNREGET ERASSRASDD EENGSTRKKL RLSKDQSAFL EESFKEHSTL NPKQKLALAK  240
QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL HELRALKTSQ  300
PFYMQLPATT LTMCPSCERV ATAGAGAGSA SKSGNTTVLP FSNNQVGKAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	212	TRKKLRL
2	256	264	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-73	HD-ZIP family protein