PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON38358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 479aa    MW: 51480.8 Da    PI: 7.9949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON38358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-11146170226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C ++++t tCk+Gd+C+F H+
  PON38358.1 146 GEKDCAHYMQTRTCKFGDSCRFDHP 170
                 7889********************8 PP

2zf-CCCH34.14.5e-11198222327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + C++f++t  Ck+G rCkF+H++
  PON38358.1 198 LPDCPYFLKTQRCKFGLRCKFNHPK 222
                 689********************96 PP

3zf-CCCH39.49.7e-13245269327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+++tGtCk+G++CkF+H++
  PON38358.1 245 EPPCAFYLKTGTCKFGSTCKFNHPK 269
                 79*********************96 PP

4zf-CCCH36.29.9e-12321346126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C+f+++tG CkyG +C+++H+
  PON38358.1 321 PGEPDCPFYLKTGSCKYGITCRYSHP 346
                 5789*********************9 PP

5zf-CCCH40.93.4e-13409430526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+f+++tG+Ck+G+rCkF+H+
  PON38358.1 409 ECDFYMKTGECKFGERCKFNHP 430
                 7********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MAGHLYGFGA AQSSAAAASA TTSLYAATEP YYPDSLASDP HRAAAAAAAA MYLGQADALG  60
AYAAASRTNS HLVSLASWTA ATAGAAATED PVTGIKRSSE ALYHPTVLGA HNTLGQSEAW  120
YSANALAKRF RYENASNLPI YPQRPGEKDC AHYMQTRTCK FGDSCRFDHP IWVPEGGIPD  180
WKEVALVASD DLPERPGLPD CPYFLKTQRC KFGLRCKFNH PKDHLAAAVA SENGDASALP  240
ERPSEPPCAF YLKTGTCKFG STCKFNHPKD IHVPSAGQEN GSSQYEAAKT DGTTGDAKHV  300
KSSESFTPAL YYNTKELPIR PGEPDCPFYL KTGSCKYGIT CRYSHPDRNA INPPAAALGH  360
AFVASPAAGL NIGVVNPVAS LYQTIDPRLA QATVGVGPTV YPQRPGQMEC DFYMKTGECK  420
FGERCKFNHP IDRSAPTLAT IQAQQQSVKL TLAGLPRREV CDTESGNCSK YSKQFKRKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-168C3H family protein