PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON38358.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 479aa MW: 51480.8 Da PI: 7.9949

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON38358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2e-11	146	170	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+C+F H+ PON38358.1 146 GEKDCAHYMQTRTCKFGDSCRFDHP 170 7889********************8 PP
2	zf-CCCH	34.1	4.5e-11	198	222	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+G rCkF+H++ PON38358.1 198 LPDCPYFLKTQRCKFGLRCKFNHPK 222 689********************96 PP
3	zf-CCCH	39.4	9.7e-13	245	269	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tGtCk+G++CkF+H++ PON38358.1 245 EPPCAFYLKTGTCKFGSTCKFNHPK 269 79*********************96 PP
4	zf-CCCH	36.2	9.9e-12	321	346	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ PON38358.1 321 PGEPDCPFYLKTGSCKYGITCRYSHP 346 5789*********************9 PP
5	zf-CCCH	40.9	3.4e-13	409	430	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+++tG+Ck+G+rCkF+H+ PON38358.1 409 ECDFYMKTGECKFGERCKFNHP 430 7********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MAGHLYGFGA AQSSAAAASA TTSLYAATEP YYPDSLASDP HRAAAAAAAA MYLGQADALG 60 AYAAASRTNS HLVSLASWTA ATAGAAATED PVTGIKRSSE ALYHPTVLGA HNTLGQSEAW 120 YSANALAKRF RYENASNLPI YPQRPGEKDC AHYMQTRTCK FGDSCRFDHP IWVPEGGIPD 180 WKEVALVASD DLPERPGLPD CPYFLKTQRC KFGLRCKFNH PKDHLAAAVA SENGDASALP 240 ERPSEPPCAF YLKTGTCKFG STCKFNHPKD IHVPSAGQEN GSSQYEAAKT DGTTGDAKHV 300 KSSESFTPAL YYNTKELPIR PGEPDCPFYL KTGSCKYGIT CRYSHPDRNA INPPAAALGH 360 AFVASPAAGL NIGVVNPVAS LYQTIDPRLA QATVGVGPTV YPQRPGQMEC DFYMKTGECK 420 FGERCKFNHP IDRSAPTLAT IQAQQQSVKL TLAGLPRREV CDTESGNCSK YSKQFKRKD

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MAGHLYGFGA AQSSAAAASA TTSLYAATEP YYPDSLASDP HRAAAAAAAA MYLGQADALG  60
AYAAASRTNS HLVSLASWTA ATAGAAATED PVTGIKRSSE ALYHPTVLGA HNTLGQSEAW  120
YSANALAKRF RYENASNLPI YPQRPGEKDC AHYMQTRTCK FGDSCRFDHP IWVPEGGIPD  180
WKEVALVASD DLPERPGLPD CPYFLKTQRC KFGLRCKFNH PKDHLAAAVA SENGDASALP  240
ERPSEPPCAF YLKTGTCKFG STCKFNHPKD IHVPSAGQEN GSSQYEAAKT DGTTGDAKHV  300
KSSESFTPAL YYNTKELPIR PGEPDCPFYL KTGSCKYGIT CRYSHPDRNA INPPAAALGH  360
AFVASPAAGL NIGVVNPVAS LYQTIDPRLA QATVGVGPTV YPQRPGQMEC DFYMKTGECK  420
FGERCKFNHP IDRSAPTLAT IQAQQQSVKL TLAGLPRREV CDTESGNCSK YSKQFKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-168	C3H family protein