PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON38356.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 78aa    MW: 8306.45 Da    PI: 5.614
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON38356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.51.1e-132446527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                +C+++++tG CkyG++CkF H+p
  PON38356.1 24 ICPYYLKTGACKYGPTCKFDHPP 46
                7********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    
MRASCLQLLI VQHLKNSFGL GSIICPYYLK TGACKYGPTC KFDHPPPGEV MGMGNTQESS  60
SIGEAAKGEE ENGGESIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.16e-15C3H family protein