PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON37584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | CO-like | ||||||||
Protein Properties | Length: 391aa MW: 42621.4 Da PI: 5.0348 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.2 | 2.5e-06 | 21 | 62 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ ++ +lC+ C +H H++ PON37584.1 21 RVCDTCRAAACTVYCRADSAYLCAGCDARIHAAnrvasrHER 62 79******99*********************55567777765 PP | |||||||
2 | zf-B_box | 28.9 | 2.4e-09 | 63 | 107 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp PON37584.1 63 VWVCEACERAPAAFICKADAASLCATCDADIHSAnplarrHHRVP 107 689*****************************6688999977776 PP | |||||||
3 | CCT | 70.3 | 4.9e-24 | 322 | 365 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PON37584.1 322 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 365 9*****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence |
MMKDETNGAV PGAGGANAWA RVCDTCRAAA CTVYCRADSA YLCAGCDARI HAANRVASRH 60 ERVWVCEACE RAPAAFICKA DAASLCATCD ADIHSANPLA RRHHRVPVLP ISGCVYGPPA 120 TDRVGSAMLG EAEDGFLSPD GDEAIDQDQD EDEDEAASWL LLNPVKGGQN QGNGFLFGGD 180 VDEYLDLVEY NSGAENQFAD PYNQSNNNHQ QQVQQSYGVS QQKSYGGDSV VPVQCVDGKS 240 QLQQQQNQSF QLGLEFESSK TAYSYNGSIS HSVSVSSMDV SVVPDSTMSD ISISHPRPPK 300 GTIDLFSGPP IQMPTQLTPM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR 360 FAKRTDVEVE VDQMFSTALM ADTGYGIVPS F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 5e-97 | CO-like family protein |