PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI26722.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family BBR-BPC
Protein Properties Length: 146aa    MW: 16293 Da    PI: 8.9665
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI26722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind56.51.3e-17131411113
   GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                 mddd ++e  r+k  yy+               ++++l   +++++ s++aer+a++   e ++a+sek++a+a+rd a+ qrd+ala+r++al+erdn
  MCI26722.1  13 MDDDHQYEngRHKVeYYRgahspwntdpqhqikEQNALV--MNKKIRSIMAERQAALleLELEAAISEKNEALAARDAALRQRDEALAQRDNALLERDN 109
                 899888888999998999********9766553224455..999************977677889********************************** PP

   GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqq 113
                 +l+al+ ++ +  s+ p++ ++ +g+k ++++ +
  MCI26722.1 110 ALAALQSRSGA--SNFPFNGGIQRGSKRMHHSSN 141
                 ******97665..8899999*********99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
TTASVAKSSG SKMDDDHQYE NGRHKVEYYR GAHSPWNTDP QHQIKEQNAL VMNKKIRSIM  60
AERQAALLEL ELEAAISEKN EALAARDAAL RQRDEALAQR DNALLERDNA LAALQSRSGA  120
SNFPFNGGIQ RGSKRMHHSS NHISNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.12e-23BBR-BPC family protein