PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI06483.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 290aa    MW: 32673.9 Da    PI: 4.9937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI06483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.11.9e-90332902264
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlta 98 
                  +lL+ c++a+ s++ +++++++a+l +lasp+g+++ R+ ay+teALa r++r +++++++ +++++ ++    +e ++al+l+++v+Pi+kf h+t 
  MCI06483.1  33 LSLLTGCVDAIGSRNVAAINHFIAKLGDLASPRGTSISRICAYYTEALAIRVTRLWPHVFQITATTRDFDRVvdDDEMITALRLLNQVTPIPKFLHFTS 131
                 689*********************************************************9997666655544688899999***************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 N+++l+a+eg+ervHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+vk
  MCI06483.1 132 NEMLLRAFEGKERVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHVK 225
                 ***************************************************....***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                 ++E++aVn+v+qlh++l +    +   +++L l++s++P++vv++eqea+hn++++  r++++l+yy
  MCI06483.1 226 EHETVAVNCVMQLHKILYDGSGGA--LRDFLGLIRSTNPTMVVMAEQEAEHNEARLDSRVCNSLKYY 290
                 *****************5544333..589*************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
DGNGSGNPYQ HEGTEVETGE EDEEEEHRGF ELLSLLTGCV DAIGSRNVAA INHFIAKLGD  60
LASPRGTSIS RICAYYTEAL AIRVTRLWPH VFQITATTRD FDRVVDDDEM ITALRLLNQV  120
TPIPKFLHFT SNEMLLRAFE GKERVHIIDF DIKQGLQWPS LFQSLASRTN PPSHVRITGV  180
GESKQELNET GDRLAGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKEHETV AVNCVMQLHK  240
ILYDGSGGAL RDFLGLIRST NPTMVVMAEQ EAEHNEARLD SRVCNSLKYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-146GRAS family protein