PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI05407.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 286aa    MW: 31844.4 Da    PI: 5.4993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI05407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS185.92.7e-5722842251
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaalkl..fsevsPil 91 
                 ++lL++cA+a+++++++laq++L+ l+++  +dgd++qRla  f +AL +r ++  + ++ +a++ +++s +n      +++++++ +l  f++++P++
  MCI05407.1   2 EQLLVHCANAIETNNATLAQRILWVLNNTTPQDGDSNQRLAGSFIRALVNRASKtGSCKMLEAVTETASSYNNrnnfamQIHKFSVIELadFVDLTPWH 100
                 79***************************************************94333555555555555444555444444444444499******** PP

        GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvl. 181
                 +f++ +aN++I+ea++g + +Hi+D+++++++Q p+L++a+a+R+e pp +++T+ +  + +           ++ e+g +L +fA++ +v +ef+++ 
  MCI05407.1 101 RFGFTAANSTIVEATKGFSVIHIVDLSLTHCMQIPTLIDAIANRDEVPPLIKLTVADCRNMNihipipplLDLSYDELGAKLVNFAKSKNVIMEFKAVs 199
                 *******************************************************99877668899998888999**********************86 PP

        GRAS 182 ..vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles........erdevLklvkslsPkvvvvveqeadhnse 251
                   +a+ +++l +e+Lrv+       +Eal++n++++lh+++de+++ ++         r+ +L++++sl P++vv+v+++a+++s+
  MCI05407.1 200 stYADGFASL-IEHLRVQVqhytktHEALVINCHMMLHYIPDETLNDTNmnsnssssLRSMFLEALRSLDPTIVVLVDEDAELTSN 284
                 6644455555.77776655556678****************66654433333444447899********************99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MEQLLVHCAN AIETNNATLA QRILWVLNNT TPQDGDSNQR LAGSFIRALV NRASKTGSCK  60
MLEAVTETAS SYNNRNNFAM QIHKFSVIEL ADFVDLTPWH RFGFTAANST IVEATKGFSV  120
IHIVDLSLTH CMQIPTLIDA IANRDEVPPL IKLTVADCRN MNIHIPIPPL LDLSYDELGA  180
KLVNFAKSKN VIMEFKAVSS TYADGFASLI EHLRVQVQHY TKTHEALVIN CHMMLHYIPD  240
ETLNDTNMNS NSSSSLRSMF LEALRSLDPT IVVLVDEDAE LTSNDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-99GRAS family protein