PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI04541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17180 Da PI: 5.4497 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.7 | 5.2e-35 | 2 | 87 | 14 | 99 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +dC++apyfp e+p+kfanvhk+FGasnv+kll++++ ++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ MCI04541.1 2 PDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNA 87 79*******************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MPDCIFAPYF PPEEPQKFAN VHKIFGASNV SKLLNEVQAH QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQRQVIRLQK ELDATNADLI RYSTCTDHIL PNNQHQDHQA TRIHEDGGGS 120 SLVHQSPPAN FYYPSPWNND PLGDGNFHTG GGDNI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-56 | LBD family protein |