PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH99800.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 133aa    MW: 16076.7 Da    PI: 9.8216
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH99800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.4e-161151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i+ +  r++tf kR+ g+lKK +E  +LCd++v+vi+++++
  MCH99800.1 11 IQKEKSRKITFQKRKSGLLKKVNEFAILCDVDVCVILYAPN 51
                778889********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MGRGRISMEL IQKEKSRKIT FQKRKSGLLK KVNEFAILCD VDVCVILYAP NFEGQGYAEP  60
ETWPKDKREV QKILQKYYNT TMDRRPKIYD AQEYFKERMK KVEFDISKVR KEMLKIMYPT  120
WDESFNSLRE EQM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-26M-type_MADS family protein