PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH96313.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 326aa    MW: 36017.4 Da    PI: 6.6427
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH96313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.34.8e-37161341112
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg....k 89 
                 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++      +    +++e+e  ++++ + ++     +
  MCH96313.1  16 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDQLppwnpiP----NATEEEGTNNNVVETNEMviaaE 110
                 589**************************************************************6654331....22322222222222222255553 PP

         TCP  90 aaksaa.kskksqksaasalnlak 112
                 +++s+  + +++++++++++++ +
  MCH96313.1 111 NSESSGyNMQQNNHNHHNHSAFIQ 134
                 333333366666666665555554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
TGGEIVQVQG GHIVRATGRK DRHSKVYTAK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS  60
KAVDWLIKKA KSAIDKLDQL PPWNPIPNAT EEEGTNNNVV ETNEMVIAAE NSESSGYNMQ  120
QNNHNHHNHS AFIQSTIDND AIAFFPTSSV AETMNFQSYS SDIISRTNNS TQDLGLSLHS  180
FQDNSATNDQ TLFSESNPVG FDANYHRIVN WNNDHGTTDM NRTGFMVNSP AFLGQGSAFS  240
AHRGTLQSSF SPSLRPXXXX XXXDSSVDHH NHKSHSHQPI NQASIFGSRF LSDALTGFCI  300
PARIQGDDES HGVGSERPSS SSNSHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.23e-67TCP family protein