PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH96208.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 283aa    MW: 33540.6 Da    PI: 7.4544
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH96208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.82.4e-801262101360
        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +Il+ +e+++++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rLa+++++++v+fe++++ ++++e++++e+L++k
  MCH96208.1   1 MILKTAEKAKTLHIIDFGILYGFQWPILIKFLSKRDGGPPKLRITGIEYPQAGfrPAERIEETGRRLANYCQRFNVSFEYKAIPSRHWETIQIEDLNIK 99 
                 5999************************************************9*****************************9999************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E++aVn+ ++ ++l+de+ +++s++d+vLkl+++++P ++v +  +  +n++ F +rf e+l +ysal+d++++ + re+e+r ++Ere+lgrei+n
  MCH96208.1 100 SDEVVAVNCLIRFKNLHDETIEVNSPKDAVLKLIRKINPSIFVQSIVNGTYNAPFFSTRFKESLFHYSALYDMYDTLICRENEWRLMIEREFLGREIMN 198
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                 vvaceg er+er et+++W+ r  + GF+++pl+++++++ +  lr  + + +  +e+++++++
  MCH96208.1 199 VVACEGLERVERPETYKQWQVRNLRTGFRQLPLDKEIMDNFRGKLRAWYHKDFVFDEDNNWMLQ 262
                 *************************************************888*********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MILKTAEKAK TLHIIDFGIL YGFQWPILIK FLSKRDGGPP KLRITGIEYP QAGFRPAERI  60
EETGRRLANY CQRFNVSFEY KAIPSRHWET IQIEDLNIKS DEVVAVNCLI RFKNLHDETI  120
EVNSPKDAVL KLIRKINPSI FVQSIVNGTY NAPFFSTRFK ESLFHYSALY DMYDTLICRE  180
NEWRLMIERE FLGREIMNVV ACEGLERVER PETYKQWQVR NLRTGFRQLP LDKEIMDNFR  240
GKLRAWYHKD FVFDEDNNWM LQGSDMPVMP YLLNLQLCDE YSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-125GRAS family protein