PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH95916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 28400 Da PI: 5.7677 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.9 | 8.6e-55 | 79 | 182 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw +q iek+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t tdifdflvdiv MCH95916.1 79 QLQAFWGNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIV 177 89****9999999************************************************************************************** PP NF-YC 97 prdel 101 pr++l MCH95916.1 178 PREDL 182 **987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MDPQGHGQNP SMGVVGGGQM ATYGSNPYQP NHLTGSPGMV VPNVGNIQPG GQPDGTQLGQ 60 HQLAYQHIHQ QQQQQQQQQL QAFWGNQYQE IEKVTDFKNH SLPLARIKKI MKADEDVKMI 120 SAEAPVVFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITGTDIF DFLVDIVPRE 180 DLKDEVLASI PRGPMPVGGP ADGIPYCYMP PQNAQQAGNP GLMMHNPNMY APQSHPYMAP 240 QMWPQPSEQQ PSPSDQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 1e-81 | NF-YC family protein |