PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH94891.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31203.6 Da    PI: 10.1845
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH94891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind303.67.2e-9312821301
   GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki.....rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllal 84 
                 mddd  +  n+gyyep    + nlgl+lm  +++r++k+     r+  + l + ++++++rd           ++  rd+++++        + ++ ++
  MCH94891.1   1 MDDDVLNMPNWGYYEPF--KAGNLGLNLMPGMNDRETKPffppgRDPAM-LVGANGTFHPRDnvaavessnpLNY-GRDNWINQ--------RPRFYNM 87 
                 899988779******98..4679*******************9888888.9***********9888888888888.88888888........6678888 PP

   GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                 ++++         ++ v ++t++  s   +  + ++d++ +       ++ +iee   ++ke  k+kkr++++ p ++kakk++k  +k++++v+    
  MCH94891.1  88 QVNNP--------NYAVPPETSQGPSFPFI-PSAVTDPPRN------ENVDEIEE-LAVKKEGGKVKKRKSKAAPTTPKAKKPRK--QKDNSNVSG--- 165
                 88444........35566666666666652.2334444444......23334433.44455555566666666777777777766..222333333... PP

   GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                  + +k +kk++ l +ng+++D+s+lPvPvCsCtG ++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaa+Gy+++np
  MCH94891.1 166 -QGVKPPKKTVALEINGIEMDISGLPVPVCSCTGNPQQCYRWGCGGWQSACCTTNVSIYPLPMSVKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFANP 263
                 .4589********************************************************************************************** PP

   GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
                 +DLk+hWA+HGtnkfvtir
  MCH94891.1 264 IDLKTHWARHGTNKFVTIR 282
                 ******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDDDVLNMPN WGYYEPFKAG NLGLNLMPGM NDRETKPFFP PGRDPAMLVG ANGTFHPRDN  60
VAAVESSNPL NYGRDNWINQ RPRFYNMQVN NPNYAVPPET SQGPSFPFIP SAVTDPPRNE  120
NVDEIEELAV KKEGGKVKKR KSKAAPTTPK AKKPRKQKDN SNVSGQGVKP PKKTVALEIN  180
GIEMDISGLP VPVCSCTGNP QQCYRWGCGG WQSACCTTNV SIYPLPMSVK RRGARIAGRK  240
MSQGAFKKVL EKLAAQGYNF ANPIDLKTHW ARHGTNKFVT IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.12e-91BBR-BPC family protein