PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH93725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 117aa MW: 12765.8 Da PI: 8.8812 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.7 | 7.8e-33 | 14 | 103 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakd.Cvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+k+ C++apyf ++ +++fa+vhk+FGasn kll ++p ++r da+ +l+yeA ara dPvyG+v++i++lqqq MCH93725.1 14 PCGACKFLRRKCVKGcCIFAPYFESSGqgSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQF 103 7*************9789*****7744257**********************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence |
MDLRYGGRDG GDGPCGACKF LRRKCVKGCC IFAPYFESSG QGSAHFAAVH KVFGASNAAK 60 LLMRIPVHKR LDAVVTLCYE ALARATDPVY GCVAHIFALQ QQFIFRAYNG APLNYND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-44 | LBD family protein |