PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH93174.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 298aa    MW: 33494.2 Da    PI: 7.8903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH93174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002298120123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ Fs+   L  H++ H
  MCH93174.1  98 FSCHFCKRQFSTLQALGGHQNAH 120
                 89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MASKSSSNIT SQDQGDSSHT KKVSNMKENE KDQSSNSNSN KSIDFVKLSK EDLVCRSKVQ  60
EYEFFGPIQV GSSSCFPDNN NEGENENNNE KNSESRSFSC HFCKRQFSTL QALGGHQNAH  120
KAERALEKQR RQKYDDGASS LGQPRFNPYF SYPSTLFPPY NYRALGVRME SMIRKPAYFN  180
PKIIHNSFGY GHNAICLQET XXXXXXXXXX XXXXXXXXXG ILSINGGATT SRIEDGANNK  240
IGAILKFEDS STSSNSNIDK KNIVAPFSIK NDIQQSKYNI EEQPSNYESS ELDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.19e-14C2H2 family protein