PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH91830.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 349aa MW: 37860.4 Da PI: 7.1999

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH91830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	201	247	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq MCH91830.1 201 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 247 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
GPGSSFKCAK PNWSSDAGSC LNQYESRSFL AKSAGFQTVV FIPLKAGVIE LGSMEMVPEE 60 QGFLDMVKTT FGESTSGQAK AAPKIFGHEL SLGDTKSQSI TISFSPKVED DSGFTSDSYE 120 VQALGANHAY GNSSNGGVGD SNDAKMFPQL SQMVPGNFTS QARVSSSIDL GNEDSSSPLG 180 DERKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI 240 THITDLQKKI KLLETEKSMV NNKGQQLSLQ DIDFQARQDD AVVRVSCPLD IHPVSGIVKV 300 FREHQIAAQE ANVSTAQDKV IHTFSIRTQG GEAAAVQLKE KLEASLAKN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

GPGSSFKCAK PNWSSDAGSC LNQYESRSFL AKSAGFQTVV FIPLKAGVIE LGSMEMVPEE  60
QGFLDMVKTT FGESTSGQAK AAPKIFGHEL SLGDTKSQSI TISFSPKVED DSGFTSDSYE  120
VQALGANHAY GNSSNGGVGD SNDAKMFPQL SQMVPGNFTS QARVSSSIDL GNEDSSSPLG  180
DERKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI  240
THITDLQKKI KLLETEKSMV NNKGQQLSLQ DIDFQARQDD AVVRVSCPLD IHPVSGIVKV  300
FREHQIAAQE ANVSTAQDKV IHTFSIRTQG GEAAAVQLKE KLEASLAKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	191	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-125	bHLH family protein