PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH91330.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 179aa    MW: 19920.5 Da    PI: 7.2425
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH91330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39111101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+l+r+C ++C++apyf a++ kkfa vhk+FGasnv+k+l ++pee+re++++sl+yeA+ar+rdPvyG++g i  lq+++ +l+++la +k+
  MCH91330.1  11 SCAACKFLKRRCIPNCIFAPYFRADECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMIELQHDLAIAKD 109
                 6*********************************************************************************************99987 PP

      DUF260 100 e 100
                 +
  MCH91330.1 110 R 110
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRADECKKF AKVHKVFGAS NVSKILIEVP  60
EEQREETVNS LAYEADARLR DPVYGCIGAI ALLQRKMIEL QHDLAIAKDR LARCAAAAAA  120
TPSSSSFSND MSNSNVSLPP FPEFYSCSDF NDNFSHSSSS QSFSRNETGD DFLQIPYIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-60LBD family protein