PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH91290.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 274aa MW: 31453.3 Da PI: 5.2912

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH91290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.8	2.6e-36	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC+++C lapyfpa+qpk f nvhklFG+sn++k+lk l++++++ am+s++ +A+ r + Pv+G+ + i +lq q+ +++el+++ + MCH91290.1 10 ACAACKFQRRKCTPECLLAPYFPADQPKIFLNVHKLFGVSNIVKILKYLEPSQKKVAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLMEEELHVVYQ 108 7*********************************************************************************************99988 PP DUF260 100 e 100 + MCH91290.1 109 Q 109 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MTLKGGTTQA CAACKFQRRK CTPECLLAPY FPADQPKIFL NVHKLFGVSN IVKILKYLEP 60 SQKKVAMDSI IIQANYRDKY PVHGCWEEIC RLQYQIWLME EELHVVYQQL EICRQQQQQL 120 PHDDVTSQLE LGMAPRSSNA LALFNQTPQP QSYNINNNNT VAAPLSVSQQ HSYSNSNSVD 180 YNNSPLYMDS KDNATNPNLW IQCPYTSNNS NSITMQPHQL IASESQPLSS VQQGVVEDNY 240 DEMHSFFDTV DDRQSYIYSK EAYESRYIDQ LTMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-44	LBD family protein