PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH90163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 19920.5 Da PI: 7.2425 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C ++C++apyf a++ kkfa vhk+FGasnv+k+l ++pee+re++++sl+yeA+ar+rdPvyG++g i lq+++ +l+++la +k+ MCH90163.1 11 SCAACKFLKRRCIPNCIFAPYFRADECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMIELQHDLAIAKD 109 6*********************************************************************************************99987 PP DUF260 100 e 100 + MCH90163.1 110 R 110 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRADECKKF AKVHKVFGAS NVSKILIEVP 60 EEQREETVNS LAYEADARLR DPVYGCIGAI ALLQRKMIEL QHDLAIAKDR LARCAAAAAA 120 TPSSSSFSND MSNSNVSLPP FPEFYSCSDF NDNFSHSSSS QSFSRNETGD DFLQIPYIF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-60 | LBD family protein |