PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH90027.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 313aa MW: 35582.2 Da PI: 8.6207

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH90027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1e-10	38	79	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE+e+++ ++ +G++ +++Ia ++ ++t +c+++++k MCH90027.1 38 PWTAEEQEIFLAKFAAYGKD-FRKIATFLN-HKTTADCVEFYYK 79 8***************99.*****.*********98 PP
2	Myb_DNA-binding	28.7	3e-09	257	297	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W+ E +++av ++G++ ++ Ia+++ +R+ +qck ++ k MCH90027.1 257 WSDVEKAAFLHAVSLFGKD-FAMIAQRVR-TRSQYQCKVFFSK 297 ***************99.*****.******88765 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MPALIWDQKD KMYSMFLSSN GLVEDPVAIE KERAMINPWT AEEQEIFLAK FAAYGKDFRK 60 IATFLNHKTT ADCVEFYYKN HKSDCFEKIK KKDDDRLGKF FKAKTDLMAS GVKCNSGVNT 120 SSLDILSEAS SVMADDIARD RKMRSGSSLW RGYNNNKAMS RGDNIITERP DSFDVLQDER 180 ETVAADVLAS ICGCVLSEAT XXXXXXXXXX VKGKRVVKKC VKAKPLSKKP PMPDITQNID 240 HETCSDESCG EMELTDWSDV EKAAFLHAVS LFGKDFAMIA QRVRTRSQYQ CKVFFSKTQK 300 RLRLNRMGHR PEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	7e-62	MYB family protein