PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH88143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 112aa MW: 12518.1 Da PI: 4.2535 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 56.2 | 1e-17 | 2 | 54 | 49 | 101 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++e+ MCH88143.1 2 LPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEI 54 7899********************************************99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence |
ELPEPQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQTQLAKA QAEIVNMHCQ 60 QANLVALICM EMSNQSSPQD HNMIINQPQP HVDMSCFLED NNFGSAWEPL WT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-35 | LBD family protein |