PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH87625.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 145aa    MW: 16493.2 Da    PI: 6.933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH87625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-052749123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ Fs+   L  H++ H
  MCH87625.1 27 YSCTFCKRGFSNAQALGGHMNIH 49
                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MEYNPNKSDQ IRWNSDDLGG PGQVRSYSCT FCKRGFSNAQ ALGGHMNIHR RDRAKLKQSS  60
EENSLSLDIS TKNTNDPDHV DLEQNHETQR GKFTKEFPRS SSYVDIKGGG VMAQRIEEKK  120
CDIDLELRLG YEPIDSSTLS TRSFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058RRDRAKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-20C2H2 family protein