PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH86926.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family BBR-BPC
Protein Properties Length: 343aa    MW: 38426.4 Da    PI: 9.9201
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH86926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.45.2e-11913431301
   GAGA_bind   1 mdddgsrernkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                 mdd  ++ r+k+ +y+         + ++ ++   +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+al+erdn++++l+++en
  MCH86926.1   1 MDDR-ENGRHKAdQYKsaqgqwlmqQ-HQHQHPSMKQIMAIMAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFREN 97 
                 6666.345999999998888888741.333334456*************************************************************** PP

   GAGA_bind  90 sla....salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
                 +la    s++p+g+q+++g+k+i++l                  +re ++++alp   +a+  +e+ k+   +rak+pke+k+ +++kk++k+++kvkk
  MCH86926.1  98 ALAnggmSSCPPGCQISRGVKHIHHLPXXXXxxxxXXXXXXXXXTRELHTTNALP---EAPIPSEVGKPP--RRAKRPKENKSVSPNKKTPKTTRKVKK 191
                 *9999999******************99655455333344444488888888887...667777777777..789************************ PP

   GAGA_bind 181 esader...............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                 e++d +                               ska++k +dl+ln+v++D+st+P+PvCsCtG+lrqCYkWGnGGWqSaCCttt+SvyPLP+++
  MCH86926.1 192 EGEDLNktmfandealewkssqeiinggddlnkqlpvSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVP 290
                 **995559******************************************************************************************* PP

   GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 ++r+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++ti+
  MCH86926.1 291 NKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 343
                 ****************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MDDRENGRHK ADQYKSAQGQ WLMQQHQHQH PSMKQIMAIM AERDAAIQER NLAISEKKAA  60
LAERDMAFLQ RDTAIAERNN ALMERDNAIA TLQFRENALA NGGMSSCPPG CQISRGVKHI  120
HHLPXXXXXX XXXXXXXXXX XTRELHTTNA LPEAPIPSEV GKPPRRAKRP KENKSVSPNK  180
KTPKTTRKVK KEGEDLNKTM FANDEALEWK SSQEIINGGD DLNKQLPVSK ADWKPQDLAL  240
NQVAYDDSTM PAPVCSCTGV LRQCYKWGNG GWQSACCTTT LSVYPLPAVP NKRHARVGGR  300
KMSGSAFNKL LSRLAAEGHD LSHPVDLKDH WAKHGTNRYI TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-137BBR-BPC family protein