PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH86844.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 405aa MW: 44363 Da PI: 4.9196

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH86844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	99.6	4.6e-31	292	405	3	122
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL++cA+av s d+++a+ +L+++++++s +gd +qRla+yf+ +L+arl+ ++ +yk+l++s++ ++ l+a+k++ +sP+ ++s+++aN++ MCH86844.1 292 TLLTQCAQAVGSYDQRNANDILKQIRQHSSAHGDGLQRLAHYFADGLEARLSA-GTPMYKQLQSSSS-----ADMLKAYKVYITASPFQRMSNFLANRT 384 69************************************************9.8889987776666.....59********************* PP GRAS 102 IleavegeervHiiDfdisqG 122 Il +++++ +HiiDf++ +G MCH86844.1 385 ILGLAQNKSSLHIIDFGVFYG 405 ***************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MLSTDTLVEN FPGSVNGCMF GNIPVSVFSN QNPENGFKFQ DSNSISIPPS THSDSPNDSG 60 TTSNVESSES SKYSNPILRF ISDILMDEED YLEKKPCMLQ DCLKLQAAEK SFYDVLGNNN 120 FDAGTVTSTS SESYSNSSYT TDNSIVDYDS PENNAYEVFD KMPHGPFRDT QGVFNFPSDA 180 WKMNQEGTLI LGSRGGSREK RGLLMNDVGI LHEEDLRSSK VSAVYSDDSE LSEMFDEVLL 240 CKDGKSPSIF GANSEPSSHS SSLGSNGNGK TSRSKKGSNK VKKLSSTVDL WTLLTQCAQA 300 VGSYDQRNAN DILKQIRQHS SAHGDGLQRL AHYFADGLEA RLSAGTPMYK QLQSSSSADM 360 LKAYKVYITA SPFQRMSNFL ANRTILGLAQ NKSSLHIIDF GVFYG

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MLSTDTLVEN FPGSVNGCMF GNIPVSVFSN QNPENGFKFQ DSNSISIPPS THSDSPNDSG  60
TTSNVESSES SKYSNPILRF ISDILMDEED YLEKKPCMLQ DCLKLQAAEK SFYDVLGNNN  120
FDAGTVTSTS SESYSNSSYT TDNSIVDYDS PENNAYEVFD KMPHGPFRDT QGVFNFPSDA  180
WKMNQEGTLI LGSRGGSREK RGLLMNDVGI LHEEDLRSSK VSAVYSDDSE LSEMFDEVLL  240
CKDGKSPSIF GANSEPSSHS SSLGSNGNGK TSRSKKGSNK VKKLSSTVDL WTLLTQCAQA  300
VGSYDQRNAN DILKQIRQHS SAHGDGLQRL AHYFADGLEA RLSAGTPMYK QLQSSSSADM  360
LKAYKVYITA SPFQRMSNFL ANRTILGLAQ NKSSLHIIDF GVFYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-43	GRAS family protein