PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH85689.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 507aa MW: 55855.8 Da PI: 7.13

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH85689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.9e-29	180	231	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ MCH85689.1 180 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 231 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MLNSLSLVVQ QACRSLHLHV VMDDTDNANH HDHDQDQFTF PTTTTNNYMP SSASDAATAS 60 LSQVDATSGC STKDTTSSSC SWIAHMMEAQ HKGKGVSVSL EYLQEPKEEF KVTTCNWDRE 120 REGNSVFSEF GQVLQHDQSS NSRASVEAGE ESGGCGVGGG RRSSSSXXXX XXXDKRRTKA 180 EKTISLPVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL 240 VIDSVQGAEG AIQIGSFYAS FPELSTATAN GGGDHNNVNN SFYNSHGDGV VTGLKSPPSA 300 CSQTXXXXXX XXXXXXXXXX XXXXXHHVMM TENPAAPSAA DALMMHGSNI NIQNYQQLQE 360 DQDTKQLLLH FNNNNNQTLP PRPTAGAWNN NNNNSSSSGL LERGAFRVKA TFADEKIRFS 420 LQAMWGFRXX XXXIARRFNL NDMNNLVLKY LDDEGEWVVL SCDADLEECK DLHTSSHTRT 480 IRLSLFQASP LNLPNNFVRN SSSSPSS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MLNSLSLVVQ QACRSLHLHV VMDDTDNANH HDHDQDQFTF PTTTTNNYMP SSASDAATAS  60
LSQVDATSGC STKDTTSSSC SWIAHMMEAQ HKGKGVSVSL EYLQEPKEEF KVTTCNWDRE  120
REGNSVFSEF GQVLQHDQSS NSRASVEAGE ESGGCGVGGG RRSSSSXXXX XXXDKRRTKA  180
EKTISLPVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL  240
VIDSVQGAEG AIQIGSFYAS FPELSTATAN GGGDHNNVNN SFYNSHGDGV VTGLKSPPSA  300
CSQTXXXXXX XXXXXXXXXX XXXXXHHVMM TENPAAPSAA DALMMHGSNI NIQNYQQLQE  360
DQDTKQLLLH FNNNNNQTLP PRPTAGAWNN NNNNSSSSGL LERGAFRVKA TFADEKIRFS  420
LQAMWGFRXX XXXIARRFNL NDMNNLVLKY LDDEGEWVVL SCDADLEECK DLHTSSHTRT  480
IRLSLFQASP LNLPNNFVRN SSSSPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	3e-80	Nin-like family protein