PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH85653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26517.2 Da PI: 6.1594 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.2 | 6.5e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++Cv+apyf +eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++la+lk MCH85653.1 11 PCGACKFLRRKCIRGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLK 109 7*************************89*********************************************************************99 PP DUF260 99 ee 100 e+ MCH85653.1 110 EQ 111 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MAGSSSVSGS PCGACKFLRR KCIRGCVFAP YFSHEQGATH FAAIHKVFGA SNVSKLLAHL 60 PVSDRCEAAV TISYEAQARL QDPIYGCVSH IFALQQQVVN LQTQLAYLKE QASQTCVNNA 120 STNENPNEKS TTLTPLQDLQ SLFHVENSNS HQHGQEFHTN NLSNISSTTQ YYVNNNNLMD 180 LNPMRNYENS RGVMEENSSF SSFEESTSNS MSYDMQTNRR TWGFDEVEDL HSVAFGYS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 5e-61 | LBD family protein |