PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH85154.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 385aa MW: 42719.8 Da PI: 4.7561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH85154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	65	88	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+ + H+ + H MCH85154.1 65 FECHKCNMTFDEKDAYLEHLLSiH 88 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
PSGQQFVSCK EVSSYLQSRF GHSDLQLQIS HRSESILQEQ RVTTENEMSL LEMENLADVQ 60 IHDLFECHKC NMTFDEKDAY LEHLLSIHQK TTRRYRLGSS VSDGVIIKDG KFECQFCHKV 120 FLEKRRYNSH VGIHVRNYLR KAEDLPGQPN VLRAEESPVT DEMPSRISKM DALIEIAQNS 180 IVEDSVMEPC SSKLNTIHVS EIAAGDLDED INVESLVSEQ QMEESLIGPN VVRDLNQQDS 240 PRLPMGGTIE KIDNDNRVIN AKTSSFLDNT GLLSVNNKNV DAPDTSKGKG DAALTVEGFD 300 HSGIDLQGVS QVPLLPSFGN HMKPGYEKSE NSGCTNTKGD LRLDENNSNK SDLKIGLDGC 360 KDVPGVANVQ VTAMPTSKEN VIQSM

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

PSGQQFVSCK EVSSYLQSRF GHSDLQLQIS HRSESILQEQ RVTTENEMSL LEMENLADVQ  60
IHDLFECHKC NMTFDEKDAY LEHLLSIHQK TTRRYRLGSS VSDGVIIKDG KFECQFCHKV  120
FLEKRRYNSH VGIHVRNYLR KAEDLPGQPN VLRAEESPVT DEMPSRISKM DALIEIAQNS  180
IVEDSVMEPC SSKLNTIHVS EIAAGDLDED INVESLVSEQ QMEESLIGPN VVRDLNQQDS  240
PRLPMGGTIE KIDNDNRVIN AKTSSFLDNT GLLSVNNKNV DAPDTSKGKG DAALTVEGFD  300
HSGIDLQGVS QVPLLPSFGN HMKPGYEKSE NSGCTNTKGD LRLDENNSNK SDLKIGLDGC  360
KDVPGVANVQ VTAMPTSKEN VIQSM