PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH84420.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 375aa MW: 42441.2 Da PI: 4.6579

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH84420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.8e-11	27	76	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 W t+E++ll++av+++G ++W+t+a +++ + t+ +c ++++ MCH84420.1 27 WGTWEELLLACAVNRHGFKDWDTVAMEVQsrtnrptLLATAHHCEQKFHD 76 *****************************999999988999999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MENHQNQTKN PDQDLDNKQH HQHQEGWGTW EELLLACAVN RHGFKDWDTV AMEVQSRTNR 60 PTLLATAHHC EQKFHDLNRR FTDDVPPPQQ NGDSADVDSD HVPWLEKLRK QRVAELRRDV 120 QRSDVSILSL QLQVKRLEEE KAKENDGEED NKPDLAVTGE EQLPENEKTG GEMEEAEPAN 180 SEPDIRRLDE STTNTDKLLP TTGEESDRDN QSVNESNSTG SRFDPAKTGD IDVKLETGPV 240 HVKSGPNDPV QTGRKKKPIE EESNNGSYDN EAKVLTCESV PPSEERKVEG DSSELHDSVT 300 RSEETGTRES SEVQSSSSLS KTRKTRRRKD VSGGDVVPEN EDVAMVKSEP LVGVLDMIKR 360 HEKFSLFERR LEKNQ

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MENHQNQTKN PDQDLDNKQH HQHQEGWGTW EELLLACAVN RHGFKDWDTV AMEVQSRTNR  60
PTLLATAHHC EQKFHDLNRR FTDDVPPPQQ NGDSADVDSD HVPWLEKLRK QRVAELRRDV  120
QRSDVSILSL QLQVKRLEEE KAKENDGEED NKPDLAVTGE EQLPENEKTG GEMEEAEPAN  180
SEPDIRRLDE STTNTDKLLP TTGEESDRDN QSVNESNSTG SRFDPAKTGD IDVKLETGPV  240
HVKSGPNDPV QTGRKKKPIE EESNNGSYDN EAKVLTCESV PPSEERKVEG DSSELHDSVT  300
RSEETGTRES SEVQSSSSLS KTRKTRRRKD VSGGDVVPEN EDVAMVKSEP LVGVLDMIKR  360
HEKFSLFERR LEKNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	330	RKTRRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	3e-43	MYB_related family protein