PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH83550.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 286aa MW: 32577.2 Da PI: 6.5123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH83550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	135	181	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + +K++Ka++L A++Y+k+Lq MCH83550.1 135 DHIIAERKRREKLSQRFIALSALVPGL-----QKMDKATVLGDAIKYLKKLQ 181 6999********************9.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MENISFIRGF PDQEIMEDPS FCLHQWHLNS IDESNSLPIA SAFGDTLQHH SYIYPNFNHR 60 TSVETAPKLD TQFVSYPNLV SFVDLNHVNQ FGLMKPKDEM VCPQNNRTSP SDMIPQGTFE 120 AKKLATRPKL SLPQDHIIAE RKRREKLSQR FIALSALVPG LQKMDKATVL GDAIKYLKKL 180 QEKVRDLEEE QNMKKNVETV VVVKKSQLRN DVENSSAESG GPFDEELPEI EARFCDRNVL 240 IRIHCEKSNG VVEKTIHEIE KLHLKVTNSS VMTFGNCALD ITIMAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	145	ERKRRE
2	141	146	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-47	bHLH family protein