PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH83126.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 275aa MW: 31601.8 Da PI: 8.4012

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH83126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4.2e-42	183	259	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rh+vC+vhsk+++v+v+g+eqrfCqqCsrfh + efD++krsCrrrLa+hnerrrk+q MCH83126.1 183 VCQVYGCNMDLSSSKDYHKRHRVCDVHSKTAKVIVNGIEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQ 259 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MESWSYIPEE RSYLFSDEMD FSLDAFMRSR KPLVEWENKS SCNFERDGFK GMEFVDLGFP 60 DFLQKSFHSS KPMETSRIVH GSVQTSSCEL DSNNSSKRGN SSSHVIAFDS SFGKEDSEPK 120 HLSSSLVELK NRDSSSIDLK LGRLADFQGA SDRXXXXXXX XXXXXXXXXX XARTSSLPAQ 180 APVCQVYGCN MDLSSSKDYH KRHRVCDVHS KTAKVIVNGI EQRFCQQCSR FHLVAEFDDG 240 KRSCRRRLAG HNERRRKPQL DYMTSKQHKI LQSYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-52	SBP family protein