PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82716.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 294aa MW: 33112.1 Da PI: 8.628

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.2	1.7e-41	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ MCH82716.1 141 VCQVEDCRADLSSAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLDEFDEGKRSCRRRLAGHNKRRRKTHP 218 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MDAKFDGKNK HLYGTVVSEM KSGSVGMESS KWDLNDWRWD GDLFTAKQLN SVPTDCRNRQ 60 LFPVDPEVSQ NVDASNNLAS GERSRELEKR RRDFVGEGLE MNDDIGSLNL NLGGQVYPIM 120 EGEEKSGKKT KIAVTTSNRA VCQVEDCRAD LSSAKDYHRR HKVCDVHSKA SKALVGNVMQ 180 RFCQQCSRFH VLDEFDEGKR SCRRRLAGHN KRRRKTHPDG AEVNGGPPNE ERGSSYLLMS 240 LLRILSNMHF NRSVSCRDCA GAAQSSCWGP QVVLQHERCS VGRVHWHTKS ATEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	217	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	2e-65	SBP family protein