PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82463.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 321aa MW: 35770.4 Da PI: 9.0103

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	7e-41	127	204	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ k+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ MCH82463.1 127 VCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNT 204 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
WNLNDWRWDG DLFLASRVNP VPAEGMRVGQ QFFPLGSGIS VAGGSSNTTS SSCSEEGDLE 60 NSKRDKEGEK KRRVIVLEDD GLNAEAGALS LNLAGQASPV VEREIATWDG MNGKKGRVVG 120 GTPNRAVCQV EDCGADLSRG KDYHRRHKVC EMHSKASRAL VGNAMQRFCQ QCSRFHILQE 180 FDEGKRSCRR RLAGHNKRRR KTNTEAVPNG SPTNDDQTSS FLLISLLKIL SNMHFVNSGA 240 PFCRGGWPPP TRYITSQKGL VAASQRDIVE QFAFVAALHM CGKEHEAEFP QIPIKFDPLQ 300 RNIFFFLVFS HRFSRKSEVS E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	73	RDKEGEKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	9e-60	SBP family protein