PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82155.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 437aa MW: 48396.5 Da PI: 8.6894

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.7e-41	165	241	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dls+ak+yhr+h+vCe h+k+p+v+v+gle rfCqqCsrfh++sefD++krsCrrrL++hn+rrrk+q+ MCH82155.1 165 CQVEGCGLDLSSAKDYHRKHRVCESHTKSPMVVVAGLELRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPQP 241 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MEWNAKSPGQ WDWENLFFLN SKATENHRLQ STDWSAETDR EINVGVLFPS GGNGYSMSKL 60 AHGSSSRSSK SPSNNSSSNG DSKTSMLTQE GSQDDSTGKK ELSKGDPIET SPAAEPLLTL 120 KLGKRFYFED VCPETHSKKA SSSAVPLSCK KKGKSKSPNL LQPSCQVEGC GLDLSSAKDY 180 HRKHRVCESH TKSPMVVVAG LELRFCQQCS RFHSVSEFDD KKRSCRRRLS DHNARRRKPQ 240 PEAVQLNPSA LHSSPYDRRQ IMGSFDFSRN ATILPWQGIQ SSKLPQTKDF MLKPPKAFNK 300 NVTMLSDDSN GHLASKGTGS KSTFPGIEDQ ATLSDPNATQ DVNRALSLLS TNSWGANDTK 360 SLSLDHTNRT TGTTQSITHT IAQRSPFPSS EYWHTDQQHA NSSTCISFSG YDNSSRFQDF 420 QLFNAPFESS FPCNQLD

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MEWNAKSPGQ WDWENLFFLN SKATENHRLQ STDWSAETDR EINVGVLFPS GGNGYSMSKL  60
AHGSSSRSSK SPSNNSSSNG DSKTSMLTQE GSQDDSTGKK ELSKGDPIET SPAAEPLLTL  120
KLGKRFYFED VCPETHSKKA SSSAVPLSCK KKGKSKSPNL LQPSCQVEGC GLDLSSAKDY  180
HRKHRVCESH TKSPMVVVAG LELRFCQQCS RFHSVSEFDD KKRSCRRRLS DHNARRRKPQ  240
PEAVQLNPSA LHSSPYDRRQ IMGSFDFSRN ATILPWQGIQ SSKLPQTKDF MLKPPKAFNK  300
NVTMLSDDSN GHLASKGTGS KSTFPGIEDQ ATLSDPNATQ DVNRALSLLS TNSWGANDTK  360
SLSLDHTNRT TGTTQSITHT IAQRSPFPSS EYWHTDQQHA NSSTCISFSG YDNSSRFQDF  420
QLFNAPFESS FPCNQLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	238	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	5e-54	SBP family protein