PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH80946.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 263aa MW: 29642.7 Da PI: 9.8452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH80946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F++k +L H + H MCH80946.1 48 FSCTVCQKQFPSKRSLGGHKKAH 70 89**************9999988 PP
2	zf-C2H2	15.3	5.6e-05	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++sFs+ L H + H MCH80946.1 174 FSCKNCNRSFSSARALGGHVKIH 196 89**************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MKGKEVLKYE QHQPSNSKMP LNINHTKNDS ICGLRMQKYE FSTPSMTFSC TVCQKQFPSK 60 RSLGGHKKAH KSDPQNNNKG NEVVQSEQYQ PSSSKMPRGH QMCHKREREI HRQENNNNCK 120 KVLTMKGNEV VKSEQHQPSN SVILVPIIDL TNNGSICGWK KVQEHDIFTP SKTFSCKNCN 180 RSFSSARALG GHVKIHKRKL NPIKLEDSVG ESSINVDTKS NSILHKSTVV ALPLDVRSTA 240 ATCGDYHDTI KEEAFELDLS LKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	9e-07	C2H2 family protein