PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH80939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 305aa MW: 34259.7 Da PI: 5.5193 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.3 | 4.8e-17 | 65 | 104 | 17 | 56 |
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 elF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k MCH80939.1 65 ELFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 104 79**********************************9877 PP | |||||||
2 | START | 35.9 | 1.8e-12 | 221 | 296 | 4 | 69 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddk 69 ++a++el+k+a+ +ep+W +s e++n+de++++f+ +++ +s+ea+r++gvv+++l++ v+ +ld MCH80939.1 221 NQAMDELIKMATMDEPLWLRSLetgrEILNYDEYMKEFVVENSdngrpkRSIEASRDTGVVFADLPRIVQCFLDAV 296 789***********************************9988899*************************999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
PPPSSSRAKD FFPSPALSLS LAGIFRHGGL AAEGEGASTS NMEVEEGEEG STVGGDQRVE 60 EISSELFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKTEIE 120 KLREKNKTLR ETINKACCPN CGVPTTNKDG AMPTEEQQLR IENVKLKAEV EKLRAALGKH 180 ASGTMSPSCS TSHDQENIKS SLDFYTGIFG LDESRIMDVV NQAMDELIKM ATMDEPLWLR 240 SLETGREILN YDEYMKEFVV ENSDNGRPKR SIEASRDTGV VFADLPRIVQ CFLDAVRYKL 300 MLIHS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 6e-90 | HD-ZIP family protein |