PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH80863.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 547aa MW: 60675.7 Da PI: 6.0565

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH80863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.4	1.9e-16	346	392	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L++l+P++ K +Ka++L kA+eY+k Lq MCH80863.1 346 VHNLSERRRRDRINERMRALQDLIPNC-----NKADKASMLDKAIEYLKTLQ 392 5***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MKKFEDLDNG NLNEILTRHV SSNHDEDVMM PWLNYAMDEH SLQHDYNYSF LHELSGVNTN 60 DFPASNIFSL LDRGSNCIQV FSDSHKQGIL CKGSSVAAEE FETFGLKNST NQLYTASRLH 120 QCQPSLENDS KSNANQHEPC EEISPIPSSS NIMNFTHFAK PVAIVKANLH NIGLSSSRSE 180 NLGIKNKDEA AKDISPFEST KVDLSGDCPR NSAIHCHHAV EPSRVDLKSL EPKSLEQNAG 240 VSTPACKEDV FKVEQTSNQV LGESGRKGQE AVEKCIEQTV VTSSVCSDNG AYRGSDDTNK 300 NLKRKNLDSE DSEWNSEDVE DESIDVKRTA HGRGGISSKR NRSAEVHNLS ERRRRDRINE 360 RMRALQDLIP NCNKADKASM LDKAIEYLKT LQLQLQIMSM GGGGLYMPMM LPPGMQHMHA 420 THMSPFYPMN IGMQMGLGVP QFQGTHLPVX XXXXXXXXXX XXRPNHQMFG KNLGTHLPMP 480 YAPMFSYPGE SVMNSSAVGL NPSGTAGLLE TVESVSTPKL MDPMPNVDSQ VMQNNNGCNS 540 INQMSIQ

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MKKFEDLDNG NLNEILTRHV SSNHDEDVMM PWLNYAMDEH SLQHDYNYSF LHELSGVNTN  60
DFPASNIFSL LDRGSNCIQV FSDSHKQGIL CKGSSVAAEE FETFGLKNST NQLYTASRLH  120
QCQPSLENDS KSNANQHEPC EEISPIPSSS NIMNFTHFAK PVAIVKANLH NIGLSSSRSE  180
NLGIKNKDEA AKDISPFEST KVDLSGDCPR NSAIHCHHAV EPSRVDLKSL EPKSLEQNAG  240
VSTPACKEDV FKVEQTSNQV LGESGRKGQE AVEKCIEQTV VTSSVCSDNG AYRGSDDTNK  300
NLKRKNLDSE DSEWNSEDVE DESIDVKRTA HGRGGISSKR NRSAEVHNLS ERRRRDRINE  360
RMRALQDLIP NCNKADKASM LDKAIEYLKT LQLQLQIMSM GGGGLYMPMM LPPGMQHMHA  420
THMSPFYPMN IGMQMGLGVP QFQGTHLPVX XXXXXXXXXX XXRPNHQMFG KNLGTHLPMP  480
YAPMFSYPGE SVMNSSAVGL NPSGTAGLLE TVESVSTPKL MDPMPNVDSQ VMQNNNGCNS  540
INQMSIQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-31	bHLH family protein