PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH80084.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 296aa MW: 32906.2 Da PI: 8.8443

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH80084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H MCH80084.1 108 FSCSFCKKQFSTSQALGGHQNAH 130 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MATTSNXSST TSEGISQKSC DEENNINNKG KEVVQCQQHQ PSNSNTKLLL DFIKLSNDDS 60 IRGSKVQEHD FFTPTKNLEV GSSSLSWANN KTNNEENPKS KSSDSKTFSC SFCKKQFSTS 120 QALGGHQNAH KRERALAKHR QEMHNGFGIP RHPFPYYTNY PSLSSSYYGF GSFNKALGIR 180 MESMIHKPSY SLTPPPYKFG STPTWTPMQE MRNFSSLGGL KIEGLNTNNG SSATPTWRNN 240 VIKLDNIGES SINVATKSNL IVDKSTVIVT DNDHHGMKKK EDSDSESTEL DLTLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	3e-11	C2H2 family protein