PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH80074.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 958aa MW: 109184 Da PI: 8.2244

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH80074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25	6.3e-08	104	185	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+++ Fs+ +++s++ +g+ + + C ++gk ++kkk ++ ++ + +++C +l+ +k ++ w+++ ++ HnHel MCH80074.1 104 AQQLMFSIIVRRSSSG-ADGKKAQLVLECERSGKYVSSKKK--LKSDSTGTRKCECPFRLRGYYNKaTKLWRLNVVNGVHNHELD 185 6777899999887765.889999***********99998..8888899999999999999988889*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence
SIGPSCVGCL TEGLRLRETE LVMGDESDGS DAKLPKQSVV EPVFSTDIVQ FEAQPSNPPP 60 QASNTLALVP TKPSPIEIDT AAHFVTDKEE SNRDDLIAWA RGVAQQLMFS IIVRRSSSGA 120 DGKKAQLVLE CERSGKYVSS KKKLKSDSTG TRKCECPFRL RGYYNKATKL WRLNVVNGVH 180 NHELDKGLEG HLVAGRLKPH ERGXVAGRLK PHERVFLEEM TKNAVAPKNI LHTLKDRDPE 240 NKTSAKQVYN ARHRYKAKLR ASRTEMQHLC KYLDDNKYFF KYRTVVEDGV EHLQDIFFAH 300 PRSVTLLNSF STVLMMDSTY STNKYKMPLF EVVGFTSTEK TFNAAFAWLS NEKEENFMWA 360 LQQLRSLLRR EDLVPKVILT DRDLALMNAI PVVFPTTTAL VCRFHVEKNV STKVKELVKV 420 RDGEKASVVW ENLCXAFKKV LESATEGEYV ENVLEFRQLC EKWPRFLKYV EETILDTDKE 480 RVVSAWVDRY MHMGSHTTNR AESAHGVLKT YLTDGLGDLV KGLDMINMML GNQFTQVQTE 540 FGQSMSVEEH RYRDKTLYSF LLFKISRAAL DYIHTEEKRV EFVGMDSMKC GCLMRRNYGL 600 PCACLIAKKL RHDQPIRLDE VYRHWKTMCF DCEDGGGDVQ DDYSCTAEWQ AIQERLRTSD 660 ISMKNNIRNQ LRLIAFPETT SLKPPTSDVK SKGAKKKKGV RATVSTTSRE KSRWEHVDAF 720 FADEQASQSS KPSPSIPSPP APLPTVSEAS VIGNLQPIQA SSQLFGIDHM PTFMHPFIED 780 ITDVDGDGYC RYRSVALYDK GNQNDFELIR LNMNRELRLN SELYVRVFGS EDRYKWISDA 840 LFPPSRQRKS NRKAVAPNEK WFTFPDMGHI VATMLDRVVV LCLGALPKHY VLVKLKEGCP 900 IPYANPQWKR CCEEQSLAWE SAFADKHQRF EELMSIERGK IVGNSVGEGS KDCPMEID

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence

SIGPSCVGCL TEGLRLRETE LVMGDESDGS DAKLPKQSVV EPVFSTDIVQ FEAQPSNPPP  60
QASNTLALVP TKPSPIEIDT AAHFVTDKEE SNRDDLIAWA RGVAQQLMFS IIVRRSSSGA  120
DGKKAQLVLE CERSGKYVSS KKKLKSDSTG TRKCECPFRL RGYYNKATKL WRLNVVNGVH  180
NHELDKGLEG HLVAGRLKPH ERGXVAGRLK PHERVFLEEM TKNAVAPKNI LHTLKDRDPE  240
NKTSAKQVYN ARHRYKAKLR ASRTEMQHLC KYLDDNKYFF KYRTVVEDGV EHLQDIFFAH  300
PRSVTLLNSF STVLMMDSTY STNKYKMPLF EVVGFTSTEK TFNAAFAWLS NEKEENFMWA  360
LQQLRSLLRR EDLVPKVILT DRDLALMNAI PVVFPTTTAL VCRFHVEKNV STKVKELVKV  420
RDGEKASVVW ENLCXAFKKV LESATEGEYV ENVLEFRQLC EKWPRFLKYV EETILDTDKE  480
RVVSAWVDRY MHMGSHTTNR AESAHGVLKT YLTDGLGDLV KGLDMINMML GNQFTQVQTE  540
FGQSMSVEEH RYRDKTLYSF LLFKISRAAL DYIHTEEKRV EFVGMDSMKC GCLMRRNYGL  600
PCACLIAKKL RHDQPIRLDE VYRHWKTMCF DCEDGGGDVQ DDYSCTAEWQ AIQERLRTSD  660
ISMKNNIRNQ LRLIAFPETT SLKPPTSDVK SKGAKKKKGV RATVSTTSRE KSRWEHVDAF  720
FADEQASQSS KPSPSIPSPP APLPTVSEAS VIGNLQPIQA SSQLFGIDHM PTFMHPFIED  780
ITDVDGDGYC RYRSVALYDK GNQNDFELIR LNMNRELRLN SELYVRVFGS EDRYKWISDA  840
LFPPSRQRKS NRKAVAPNEK WFTFPDMGHI VATMLDRVVV LCLGALPKHY VLVKLKEGCP  900
IPYANPQWKR CCEEQSLAWE SAFADKHQRF EELMSIERGK IVGNSVGEGS KDCPMEID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-14	FAR1 family protein