PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG063900.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 372aa MW: 39441.5 Da PI: 6.2827

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG063900.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.4	4.4e-06	13	53	4	40
zf-B_box 4 rkCpeHee.kelqlfCedCqqllCedCllee.Hkg..Htvv 40 r+C +e ++ +C+dC +lC C H + H++v TRIDC7BG063900.2 13 RRCGACEGaAPAAVHCRDCAGYLCTGCDARPaHARagHERV 53 79***8688****************999977889875 PP
2	zf-B_box	21.9	3.8e-07	53	98	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ H +vp+ TRIDC7BG063900.2 53 VWVCEVCEVSPAAVTCKADAAVLCAACDADIHHAnplaerHVRVPI 98 689***999******************644588888988876 PP
3	CCT	69.4	9e-24	295	338	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a TRIDC7BG063900.2 295 RVARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 338 89****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MMELRKYWGV GGRRCGACEG AAPAAVHCRD CAGYLCTGCD ARPAHARAGH ERVWVCEVCE 60 VSPAAVTCKA DAAVLCAACD ADIHHANPLA ERHVRVPIAP IGSPEAAAVA AEAMMFCGAG 120 DGEARADQDE VPEQLRQHGG MLNLNVEAGK EGGKMDYLFS DLVDPYLAVD FTRFAHADSV 180 VPSGVATAAV PAVVDLDFAC GIPAKPPPTY SSSYTANASG AHSGSSSEVG VVPEAICGGV 240 GSFEIDFTRP KPQAYMPAYT AAPPSHGVSM QQASPVDMGY LTVPERPVAV TGEGRVARLM 300 RYREKRKNRR FEKTIRYASR KAYAESRPRV KGRFAKRADQ DADGDDLDAE AHAVPSSTSY 360 LLDFGYGVVP SF

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MMELRKYWGV GGRRCGACEG AAPAAVHCRD CAGYLCTGCD ARPAHARAGH ERVWVCEVCE  60
VSPAAVTCKA DAAVLCAACD ADIHHANPLA ERHVRVPIAP IGSPEAAAVA AEAMMFCGAG  120
DGEARADQDE VPEQLRQHGG MLNLNVEAGK EGGKMDYLFS DLVDPYLAVD FTRFAHADSV  180
VPSGVATAAV PAVVDLDFAC GIPAKPPPTY SSSYTANASG AHSGSSSEVG VVPEAICGGV  240
GSFEIDFTRP KPQAYMPAYT AAPPSHGVSM QQASPVDMGY LTVPERPVAV TGEGRVARLM  300
RYREKRKNRR FEKTIRYASR KAYAESRPRV KGRFAKRADQ DADGDDLDAE AHAVPSSTSY  360
LLDFGYGVVP SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	7e-35	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG063900.2