PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG056150.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 374aa    MW: 42193.8 Da    PI: 10.0337
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG056150.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-081540127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +kt+lC  ++r G C++G++C FaHg+
  TRIDC7BG056150.1 15 FKTKLCALWRR-GPCPRGPSCGFAHGE 40
                      69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MREMLDPPPR RGPAFKTKLC ALWRRGPCPR GPSCGFAHGE GELRTPPPYS TFPPRTGPGG  60
RDHRIHEFRG RPERRNSPRR RYSPDRDTRG HLFRNKMPPR SRGSSQSRSP IRKSERRSKK  120
EVDGEKSDSS GSFNTSENED RKKDNRHSSS DEKDEKDDGE AQLKQIALDM KALHEDKSKL  180
QMILDEKIDE AGILSGRVDD LESQLNKEKE DCERMTSKIK KLIKAYGRYV KAQDDLKRSQ  240
GRFERLADSL ASDSLKSGTK EQGSSVNAGN DDPYNAYEMS PDDQRQKNGS AARKRSAALS  300
TSEEEKTGKK RRVNGNDMIH VPRKHIPGGA LESLKNSNGT ESLKKLGEDD NNDEINVISS  360
GNDFTDRVEC SRVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293312RKRSAALSTSEEEKTGKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-20C3H family protein