PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG048400.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 287aa MW: 30014.3 Da PI: 9.6946

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG048400.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.5e-08	89	114	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7BG048400.8 89 KTRLCNKFNTAEGCKWGNKCHFAHGE 114 9***********************96 PP
2	zf-CCCH	37.5	3.9e-12	253	278	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7BG048400.8 253 FKTKLCDNFNK-GSCTFGDRCHFAHGE 278 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
TSNVESKCPI VVIMFGGIYI KQPLQNNGCR IFTAGCPFGS SCHFLHNFPG GHQAVSKMTN 60 LGGPAVSAPQ GRMPMGPGVP DGPPTPSLKT RLCNKFNTAE GCKWGNKCHF AHGERELGKP 120 MLLNNSMAPP MGPRPNGHFQ PPPMPGPDMV PPSTFGASAT AKISVDASLA GAIIGKGGVN 180 TKHISRMTGA KLAIRDNEAD PNHKNIELEG SFDQVNHASA MVKELILRIG GNAPPQAKNP 240 GRGPAGGGGG SNFKTKLCDN FNKGSCTFGD RCHFAHGESE LRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG048400.8