PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG048400.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 302aa    MW: 31516.8 Da    PI: 9.8157
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG048400.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-073862226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      k ++C  f+ t  C++G++C+F H 
  TRIDC7BG048400.6 38 KSKPCTKFFSTAGCPFGSSCHFLHN 62
                      7789********************7 PP
2zf-CCCH247e-08104129227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ f     Ck G++C+FaHg+
  TRIDC7BG048400.6 104 KTRLCNKFNTAEGCKWGNKCHFAHGE 129
                       9***********************96 PP
3zf-CCCH37.44.2e-12268293127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC7BG048400.6 268 FKTKLCDNFNK-GSCTFGDRCHFAHGE 293
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MFSYKCQDFS KINTVLTGAS NKFGVAESES VQTGVGSKSK PCTKFFSTAG CPFGSSCHFL  60
HNFPGGHQAV SKMTNLGGPA VSAPQGRMPM GPGVPDGPPT PSLKTRLCNK FNTAEGCKWG  120
NKCHFAHGER ELGKPMLLNN SMAPPMGPRP NGHFQPPPMP GPDMVPPSTF GASATAKISV  180
DASLAGAIIG KGGVNTKHIS RMTGAKLAIR DNEADPNHKN IELEGSFDQV NHASAMVKEL  240
ILRIGGNAPP QAKNPGRGPA GGGGGSNFKT KLCDNFNKGS CTFGDRCHFA HGESELRKSA  300
AA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-55C3H family protein