PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7BG048400.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 283aa MW: 29576.6 Da PI: 10.0858 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 19 | 43 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H TRIDC7BG048400.5 19 KSKPCTKFFSTAGCPFGSSCHFLHN 43 7789********************7 PP | |||||||
2 | zf-CCCH | 24.1 | 6.4e-08 | 85 | 110 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7BG048400.5 85 KTRLCNKFNTAEGCKWGNKCHFAHGE 110 9***********************96 PP | |||||||
3 | zf-CCCH | 37.5 | 3.8e-12 | 249 | 274 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7BG048400.5 249 FKTKLCDNFNK-GSCTFGDRCHFAHGE 274 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence |
CRQARQRESE SVQTGVGSKS KPCTKFFSTA GCPFGSSCHF LHNFPGGHQA VSKMTNLGGP 60 AVSAPQGRMP MGPGVPDGPP TPSLKTRLCN KFNTAEGCKW GNKCHFAHGE RELGKPMLLN 120 NSMAPPMGPR PNGHFQPPPM PGPDMVPPST FGASATAKIS VDASLAGAII GKGGVNTKHI 180 SRMTGAKLAI RDNEADPNHK NIELEGSFDQ VNHASAMVKE LILRIGGNAP PQAKNPGRGP 240 AGGGGGSNFK TKLCDNFNKG SCTFGDRCHF AHGESELRKS AAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-55 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7BG048400.5 |