PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG048400.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 286aa    MW: 29615.7 Da    PI: 10.1912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG048400.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-072246226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      k ++C  f+ t  C++G++C+F H 
  TRIDC7BG048400.4 22 KSKPCTKFFSTAGCPFGSSCHFLHN 46
                      7789********************7 PP
2zf-CCCH24.16.5e-0888113227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ f     Ck G++C+FaHg+
  TRIDC7BG048400.4  88 KTRLCNKFNTAEGCKWGNKCHFAHGE 113
                       9***********************96 PP
3zf-CCCH37.53.9e-12252277127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC7BG048400.4 252 FKTKLCDNFNK-GSCTFGDRCHFAHGE 277
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
GGAAVKRARA ESESVQTGVG SKSKPCTKFF STAGCPFGSS CHFLHNFPGG HQAVSKMTNL  60
GGPAVSAPQG RMPMGPGVPD GPPTPSLKTR LCNKFNTAEG CKWGNKCHFA HGERELGKPM  120
LLNNSMAPPM GPRPNGHFQP PPMPGPDMVP PSTFGASATA KISVDASLAG AIIGKGGVNT  180
KHISRMTGAK LAIRDNEADP NHKNIELEGS FDQVNHASAM VKELILRIGG NAPPQAKNPG  240
RGPAGGGGGS NFKTKLCDNF NKGSCTFGDR CHFAHGESEL RKSAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-55C3H family protein