PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG048400.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 266aa MW: 27888.7 Da PI: 10.4197

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG048400.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.9e-08	68	93	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7BG048400.3 68 KTRLCNKFNTAEGCKWGNKCHFAHGE 93 9***********************96 PP
2	zf-CCCH	37.7	3.5e-12	232	257	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7BG048400.3 232 FKTKLCDNFNK-GSCTFGDRCHFAHGE 257 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
QRRRCRQARQ STAGCPFGSS CHFLHNFPGG HQAVSKMTNL GGPAVSAPQG RMPMGPGVPD 60 GPPTPSLKTR LCNKFNTAEG CKWGNKCHFA HGERELGKPM LLNNSMAPPM GPRPNGHFQP 120 PPMPGPDMVP PSTFGASATA KISVDASLAG AIIGKGGVNT KHISRMTGAK LAIRDNEADP 180 NHKNIELEGS FDQVNHASAM VKELILRIGG NAPPQAKNPG RGPAGGGGGS NFKTKLCDNF 240 NKGSCTFGDR CHFAHGESEL RKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-55	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG048400.3